High-Protein Pizza Pasta Bake

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This satisfying pasta bake delivers 31 grams of protein per serving by combining high-protein pasta with lean ground beef, pepperoni, and a clever Greek yogurt-cheese sauce. The creamy, tangy sauce blends Greek yogurt with mozzarella and Parmesan, creating a rich base that coats every penne perfectly. After sautéing beef with onions, garlic, and vegetables, everything gets tossed with marinara and the yogurt sauce, then topped with extra cheese and pepperoni for that classic pizza flavor profile.

Bake for 20 minutes until bubbly and golden, let rest briefly, and serve with fresh herbs. The result is a comforting, protein-rich dish that captures all the beloved flavors of pizza in pasta form—perfect for meal prep or feeding a hungry crowd.

Updated on Mon, 09 Feb 2026 16:14:00 GMT
Golden, bubbly High-Protein Pizza Pasta Bake fresh from the oven in a baking dish. Save
Golden, bubbly High-Protein Pizza Pasta Bake fresh from the oven in a baking dish. | berrycottage.com

My roommate swore by high-protein everything, and one Tuesday night he showed up with a container of Greek yogurt and an idea that sounded absolutely wild: creamy pasta bake with yogurt instead of heavy cream. I was skeptical until I tasted it, and suddenly I understood why he kept raving about finding ways to make comfort food actually work for his goals. This dish became my go-to when I wanted something that felt indulgent but didn't leave me feeling sluggish, especially after gym days when my body needed real fuel.

I made this for a small dinner party last winter when someone asked for "something hearty but not crazy heavy," and watching people go back for thirds while genuinely surprised at how filling it was felt like a small victory in the kitchen. One guest even texted me the next day asking for the recipe because her partner had requested it specifically for meal prep. That's when I knew this wasn't just a protein hack but something that actually made people happy.

Ingredients

  • High-protein penne or rotini pasta, 12 oz: High-protein pasta brands have added fiber and legume protein that makes them less likely to turn mushy when baked, plus they hold onto sauce better than regular pasta.
  • Lean ground beef, 8 oz: The leanness matters here because you're not draining off a puddle of fat; leaner meat means more beef flavor packed into fewer calories.
  • Turkey or regular pepperoni, 2 oz sliced, plus 1 oz for topping: Pepperoni brings salt and richness that balances the tanginess of Greek yogurt; don't skip this because it's what makes the sauce interesting.
  • Medium onion, finely chopped: Finely chopped onions dissolve almost completely into the sauce, sweetening it naturally as they cook down.
  • Garlic, 2 cloves minced: Garlic added after the softer vegetables prevents it from burning and keeps its bright, fresh bite.
  • Bell pepper and mushrooms, optional but recommended: These add textural contrast and umami depth without adding significant calories; I always include them.
  • Low-sodium marinara sauce, 2 cups: Low-sodium lets you control the salt; regular sauce can make this unbearably salty once it reduces and concentrates in the oven.
  • Plain Greek yogurt, 1 cup: The acid in yogurt reacts with the tomato sauce to create a complex flavor you can't replicate with cream; use 2% or fat-free for the protein content to really shine.
  • Part-skim mozzarella, 1 cup plus ½ cup for topping: Part-skim still melts beautifully but doesn't make the sauce feel greasy; full-fat will work but changes the macros.
  • Parmesan cheese, ¼ cup grated: Parmesan adds umami and a subtle salty nuttiness that deepens the whole dish.
  • Dried oregano and basil, ½ tsp each: These Italian herbs are essential here; skip the fresh and use dried because you want them to infuse into the sauce during baking.
  • Crushed red pepper flakes, ¼ tsp optional: A tiny pinch adds warmth without heat, making people wonder what gives the dish its complexity.
  • Salt and black pepper to taste: Taste as you go because marinara levels vary and you don't want to over-salt before baking.

Instructions

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Get your baking dish ready:
Preheat your oven to 375°F and grease a 9x13-inch baking dish with a light hand; you want the pasta to slide around a bit when it bubbles up, not stick to the edges.
Cook the pasta just right:
Boil salted water and cook your pasta to just under al dente because it'll keep cooking in the oven and you want it tender, not mushy. Drain it and set it aside in a big bowl.
Brown the beef and build flavor:
In a large skillet over medium heat, crumble the ground beef and cook it until it's no longer pink and starting to brown at the edges; this takes about 5-6 minutes. Add the finely chopped onion and let it soften for another 3-4 minutes until it starts to turn translucent and sweet.
Sauté the aromatics and veggies:
Stir in the minced garlic, diced bell pepper, and mushrooms, and let everything soften together for 3 minutes so the garlic doesn't burn. You'll notice the skillet will smell absolutely incredible at this point.
Create the tomato base:
Pour in the marinara sauce, sprinkle in the oregano, basil, and a pinch of red pepper flakes if you want that gentle heat. Simmer everything together for 5 minutes to let the flavors marry, then taste and season with salt and pepper.
Whisk the creamy component:
In a separate bowl, whisk together the Greek yogurt, 1 cup of mozzarella, and the Parmesan until it's completely smooth with no lumps; this mixture should feel thick but pourable.
Combine everything together:
Pour the cooked pasta into your large mixing bowl, add the beef sauce, toss in the sliced pepperoni, then pour the yogurt-cheese mixture over everything and toss vigorously until every pasta piece is coated. It should look creamy and rich but not gluggy.
Transfer to the baking dish:
Pour the entire mixture into your prepared baking dish and smooth the top slightly with a spatula. Scatter the remaining ½ cup of mozzarella evenly across the top and lay the extra pepperoni slices on top in a casual arrangement.
Bake until golden and bubbly:
Bake uncovered for 20 minutes until you see bubbles coming up at the edges and the cheese on top is melted and lightly golden; you might see some brown spots on the pepperoni, and that's exactly what you want.
Rest and finish:
Let the bake sit for 5 minutes so the sauce sets slightly and everything becomes easier to serve. Scatter fresh basil or parsley on top right before plating for a bright contrast.
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Sliced High-Protein Pizza Pasta Bake served on a white plate with a fresh green salad. Save
Sliced High-Protein Pizza Pasta Bake served on a white plate with a fresh green salad. | berrycottage.com

There's something about watching someone cut into a bubbling pasta bake and discovering it's actually a protein-forward meal that makes the whole "healthy eating" thing feel less like a chore. My friend who originally suggested this said it best: food that works for your body and tastes like comfort isn't a compromise, it's just good cooking.

Why This Sauce Works So Well

Greek yogurt has this magical property where it adds creaminess and tang without the heaviness of cream or the greasiness of full-fat cheese, but only if you treat it right. When you whisk it with Parmesan first, you're creating an emulsion that stays smooth even as it bakes, rather than separating into watery puddles. The marinara sauce's acidity plays nicely with the yogurt's tartness, creating this complex flavor that makes people lean in and ask what's in it.

Building Flavor Without Extra Calories

The pepperoni here isn't just a topping; it's a flavor anchor that brings salt, fat, and smoke to every bite without adding much volume. Adding garlic, onion, and herbs gives you the feeling of restaurant-quality depth even though you're using straightforward ingredients and reasonable portions. This is how you eat food that feels indulgent while actually nourishing your body instead of making you feel weighed down afterward.

Making It Your Own

This recipe is honestly a canvas, which means you can adjust it based on what's in your fridge or what you're craving. Spinach wilts right into the sauce and adds iron; zucchini brings moisture and lightness; olives add a briny complexity that's distinctly different from pepperoni.

  • Swap ground turkey or chicken for beef if you want even leaner protein, and the flavor will still be rich thanks to the pepperoni.
  • Use whole-wheat or chickpea pasta to boost fiber and protein content without changing much else about the recipe.
  • Serve with a crisp green salad and a dry Italian red wine to cut through the richness and make it feel like dinner instead of just food.
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A serving of High-Protein Pizza Pasta Bake with melty mozzarella, pepperoni, and fresh basil garnish. Save
A serving of High-Protein Pizza Pasta Bake with melty mozzarella, pepperoni, and fresh basil garnish. | berrycottage.com

This bake proves that eating for your goals and eating for pleasure don't have to be different things, and honestly, that's been the most useful thing I've learned in the kitchen. Make it for people you care about and watch them realize that healthy eating can taste this good.

Recipe FAQ

Can I use regular pasta instead of high-protein pasta?

Yes, regular penne or rotini works perfectly. You'll get about 20-22 grams of protein per serving instead of 31 grams, but the dish remains satisfying and delicious.

What makes the sauce creamy?

Greek yogurt blended with shredded mozzarella and Parmesan creates a smooth, tangy creaminess without heavy cream. The yogurt adds protein while keeping the texture rich and velvety.

Can I make this ahead of time?

Absolutely. Assemble everything through step 7, cover tightly, and refrigerate up to 24 hours. Add 5-10 minutes to baking time if baking cold from the refrigerator.

How do I prevent the yogurt from curdling?

Whisk the yogurt with shredded cheeses before combining with hot pasta. The cheese stabilizes the yogurt, and mixing it off the heat prevents separation. Avoid boiling after adding the yogurt mixture.

What vegetables work best in this bake?

Bell peppers, mushrooms, spinach, zucchini, and olives all complement the pizza flavors. Sauté hearty vegetables like peppers and mushrooms with the beef, and stir in delicate greens like spinach just before baking.

Can I freeze leftovers?

Yes, portion cooled leftovers into airtight containers and freeze up to 3 months. Thaw overnight in the refrigerator and reheat at 350°F covered with foil until heated through.

High-Protein Pizza Pasta Bake

Hearty pasta bake with beef, pepperoni, and creamy yogurt sauce baked until golden and bubbly.

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Prep duration
20 min
Cook duration
30 min
Complete duration
50 min
Created by Lily Anderson


Complexity Easy

Heritage American-Italian

Output 6 Portions

Dietary considerations None specified

Components

Pasta

01 12 oz high-protein penne or rotini pasta

Meats

01 8 oz lean ground beef
02 2 oz turkey or regular pepperoni, sliced

Vegetables and Aromatics

01 1 medium onion, finely chopped
02 2 cloves garlic, minced
03 1 bell pepper, diced
04 1 cup sliced mushrooms

Sauce

01 2 cups low-sodium marinara sauce
02 1 cup plain Greek yogurt, 2% or fat-free
03 1 cup part-skim shredded mozzarella cheese
04 ¼ cup grated Parmesan cheese
05 ½ teaspoon dried oregano
06 ½ teaspoon dried basil
07 ¼ teaspoon crushed red pepper flakes
08 Salt and black pepper to taste

Topping

01 ½ cup part-skim shredded mozzarella cheese
02 1 oz pepperoni, sliced for topping
03 Fresh basil or parsley, chopped

Directions

Direction 01

Prepare baking dish and preheat oven: Preheat oven to 375°F. Grease a 9x13-inch baking dish and set aside.

Direction 02

Cook pasta to al dente: Cook pasta in a large pot of salted boiling water until just al dente. Drain and set aside.

Direction 03

Brown ground beef and aromatics: In a large skillet over medium heat, cook ground beef, breaking it up, until browned and cooked through. Add chopped onion and cook 3 to 4 minutes until softened.

Direction 04

Add vegetables and aromatics: Stir in minced garlic, diced bell pepper, and sliced mushrooms. Sauté for another 3 minutes. Drain excess fat if needed.

Direction 05

Build the beef and marinara sauce: Stir in marinara sauce, oregano, basil, and red pepper flakes. Simmer for 5 minutes. Season with salt and pepper to taste.

Direction 06

Prepare yogurt-cheese mixture: In a bowl, whisk together Greek yogurt, 1 cup mozzarella cheese, and Parmesan until smooth.

Direction 07

Combine all components: In a large mixing bowl, combine cooked pasta, beef-vegetable sauce, sliced pepperoni, and yogurt-cheese mixture. Toss well to coat.

Direction 08

Assemble in baking dish: Transfer mixture to prepared baking dish. Top with remaining ½ cup mozzarella and extra pepperoni slices.

Direction 09

Bake until bubbly and golden: Bake uncovered for 20 minutes, until bubbly and golden.

Direction 10

Rest and garnish: Let rest 5 minutes before garnishing with fresh basil or parsley. Serve warm.

Necessary tools

  • Large pot
  • Large skillet
  • Mixing bowls
  • 9x13-inch baking dish
  • Whisk
  • Spatula

Allergy information

Review each ingredient for potential allergens and seek professional medical advice if you have concerns.
  • Contains wheat from pasta
  • Contains milk from cheese and yogurt
  • May contain sulfites from pepperoni
  • Check labels for gluten-free pasta and nitrate-free pepperoni if needed

Nutritional information (per portion)

These values are estimates only and shouldn't replace professional medical guidance.
  • Energy: 410
  • Fats: 13 g
  • Carbohydrates: 40 g
  • Proteins: 31 g