
This harvest-inspired acorn squash breakfast muffin recipe transforms humble winter squash into a morning treat your family will request again and again. The natural sweetness of roasted acorn squash pairs beautifully with warm spices and a maple glaze that makes these muffins feel special enough for weekend brunches yet simple enough for everyday breakfasts.
I created these muffins during a particularly abundant squash harvest from our garden last fall. My children were getting tired of roasted squash sides, but these muffins disappeared within hours of coming out of the oven.
Ingredients
- Acorn squash: provides natural sweetness and moisture while adding nutritional value. Choose one that feels heavy for its size with smooth dark green skin.
- All purpose flour: creates the perfect tender structure. Unbleached varieties work wonderfully here.
- Brown sugar: adds depth with its molasses notes that complement the squash perfectly.
- Cinnamon and nutmeg: provide classic fall flavor that enhances the natural sweetness of the squash.
- Pure maple syrup: gives the glaze an authentic woodsy sweetness that elevates these muffins. Avoid pancake syrup which contains corn syrup.
- Unsalted butter: adds richness and allows you to control the salt level precisely.
Instructions
- Roast the Squash:
- Cut acorn squash in half from stem to end and scoop out seeds. Brush cut sides generously with olive oil and place cut side down on a baking sheet. Roast at 400°F for 30 to 40 minutes until the flesh yields easily when pressed with a fork. Allow to cool completely before scooping out the tender flesh. Puree until silky smooth using a food processor or blender.
- Prepare the Dry Ingredients:
- Whisk together flour, baking powder, baking soda, salt, cinnamon, and nutmeg in a large bowl until evenly distributed. This ensures your leavening agents are evenly distributed throughout the batter for consistent rise.
- Mix the Wet Ingredients:
- Combine melted butter and brown sugar in a separate bowl, whisking vigorously until the mixture lightens slightly in color and becomes smooth. Add eggs one at a time, incorporating fully after each addition. Stir in vanilla, milk, and exactly one cup of your freshly made squash puree until the mixture becomes uniform.
- Combine Wet and Dry Mixtures:
- Pour the wet ingredients into the dry ingredients and fold together using a rubber spatula with gentle strokes. Stop mixing as soon as no dry flour pockets remain. Overmixing develops gluten which will make your muffins tough rather than tender.
- Fill Muffin Cups:
- Divide the batter evenly among 12 muffin cups, filling each about three quarters full. Use an ice cream scoop for uniform portions that will bake evenly.
- Bake to Golden Perfection:
- Place in a preheated 350°F oven and bake for 20 to 25 minutes. The muffins are done when the tops spring back when lightly touched and a toothpick inserted into the center comes out with just a few moist crumbs.

The acorn squash is truly the star ingredient here. I discovered its potential for baking quite by accident when I was looking for ways to use up garden surplus. The natural sweetness concentrates during roasting, giving these muffins a complexity you simply cannot achieve with canned pumpkin.
Make Ahead Magic
These muffins actually improve with a day of rest as the flavors meld and deepen. Make them the evening before a busy morning and enjoy them at their peak the next day. Store cooled muffins in an airtight container at room temperature for up to three days. The moisture from the squash keeps them from drying out like other muffins might.
Seasonal Variations
Fall Harvest Version
Add 1/2 cup chopped toasted pecans to the batter
Fold in 1/3 cup dried cranberries for tart contrast
Increase cinnamon to 1 1/2 teaspoons for more warmth
Winter Holiday Version
Replace vanilla extract with almond extract
Add orange zest to the batter for brightness
Sprinkle with turbinado sugar before baking instead of glazing
Spring Refresh Version
Add lemon zest to the batter
Replace maple glaze with lemon glaze using lemon juice
Fold in fresh blueberries for a spring twist
Freezer Instructions
These muffins freeze beautifully, making them perfect for meal prep. Allow muffins to cool completely, then place in a single layer on a baking sheet and freeze until solid. Transfer frozen muffins to a freezer bag or container and store for up to 3 months. Thaw overnight in the refrigerator or defrost in the microwave for 30 seconds when needed.
For best results, freeze muffins unglazed and add fresh glaze after thawing. If glazed muffins are frozen, the glaze may become slightly less shiny but will still taste delicious.

Recipe FAQ
- → Can I use a different squash?
Yes, butternut squash or pumpkin purée work well as substitutes for acorn squash in this muffin.
- → Is the maple glaze essential?
While delicious, the muffins can be enjoyed plain or with a simple dusting of powdered sugar instead.
- → Can I add nuts to the batter?
Chopped pecans or walnuts make a tasty addition and add crunch to the muffins; use about ½ cup mixed in.
- → How should I store these muffins?
Keep the muffins in an airtight container at room temperature for up to 3 days or freeze for longer storage.
- → Are these muffins dairy-free?
No, they contain butter and milk, but you may substitute with dairy-free options if needed for your diet.
- → What pairs well as a beverage?
Enjoy these muffins with spiced chai, coffee, or your favorite breakfast tea for a complete morning treat.